Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05360.1COG0582 Integrase; Belongs to the 'phage' integrase family. (401 aa)    
Predicted Functional Partners:
xerC
Tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.678
EAQ06935.1
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.644
EAQ05361.1
Hypothetical protein; COG1396 Predicted transcriptional regulators.
       0.558
EAQ05983.1
Hypothetical protein; COG0582 Integrase.
  
     0.494
EAQ05358.1
Transcriptional regulator, XRE family; COG2944 Predicted transcriptional regulator.
       0.472
EAQ05359.1
COG2929 Uncharacterized protein conserved in bacteria.
       0.471
EAQ07502.1
Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.
   
    0.463
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.459
EAQ07977.1
COG0287 Prephenate dehydrogenase.
  
    0.417
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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