Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05377.1Hypothetical protein. (211 aa)    
Predicted Functional Partners:
EAQ05375.1
COG3744 Uncharacterized protein conserved in bacteria.
       0.535
EAQ05376.1
Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.535
EAQ05378.1
Hypothetical protein.
       0.420
EAQ05379.1
DNA primase domain protein; COG5519 Superfamily II helicase and inactivated derivatives.
       0.420
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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