EAQ05386.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ05386.1

Site-specific recombinase XerD-like; COG0582 Integrase; Belongs to the 'phage' integrase family. (401 aa)

Predicted Functional Partners:

xerC

0.715

EAQ06935.1

0.644

EAQ05983.1

0.485

EAQ07502.1

0.463

apt

0.459

EAQ07977.1

0.417

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05386.1	EAQ05983.1	SKA53_00380	SKA53_07756	Site-specific recombinase XerD-like; COG0582 Integrase; Belongs to the 'phage' integrase family.	Hypothetical protein; COG0582 Integrase.	0.485
EAQ05386.1	EAQ06935.1	SKA53_00380	SKA53_15346	Site-specific recombinase XerD-like; COG0582 Integrase; Belongs to the 'phage' integrase family.	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.644
EAQ05386.1	EAQ07502.1	SKA53_00380	SKA53_11733	Site-specific recombinase XerD-like; COG0582 Integrase; Belongs to the 'phage' integrase family.	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	0.463
EAQ05386.1	EAQ07977.1	SKA53_00380	SKA53_09644	Site-specific recombinase XerD-like; COG0582 Integrase; Belongs to the 'phage' integrase family.	COG0287 Prephenate dehydrogenase.	0.417
EAQ05386.1	apt	SKA53_00380	SKA53_08371	Site-specific recombinase XerD-like; COG0582 Integrase; Belongs to the 'phage' integrase family.	Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	0.459
EAQ05386.1	xerC	SKA53_00380	SKA53_09629	Site-specific recombinase XerD-like; COG0582 Integrase; Belongs to the 'phage' integrase family.	Tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.715
EAQ05983.1	EAQ05386.1	SKA53_07756	SKA53_00380	Hypothetical protein; COG0582 Integrase.	Site-specific recombinase XerD-like; COG0582 Integrase; Belongs to the 'phage' integrase family.	0.485
EAQ05983.1	EAQ06935.1	SKA53_07756	SKA53_15346	Hypothetical protein; COG0582 Integrase.	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.644
EAQ05983.1	EAQ07502.1	SKA53_07756	SKA53_11733	Hypothetical protein; COG0582 Integrase.	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	0.463
EAQ05983.1	EAQ07977.1	SKA53_07756	SKA53_09644	Hypothetical protein; COG0582 Integrase.	COG0287 Prephenate dehydrogenase.	0.417
EAQ05983.1	apt	SKA53_07756	SKA53_08371	Hypothetical protein; COG0582 Integrase.	Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	0.459
EAQ06935.1	EAQ05386.1	SKA53_15346	SKA53_00380	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Site-specific recombinase XerD-like; COG0582 Integrase; Belongs to the 'phage' integrase family.	0.644
EAQ06935.1	EAQ05983.1	SKA53_15346	SKA53_07756	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Hypothetical protein; COG0582 Integrase.	0.644
EAQ06935.1	xerC	SKA53_15346	SKA53_09629	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.644
EAQ07502.1	EAQ05386.1	SKA53_11733	SKA53_00380	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	Site-specific recombinase XerD-like; COG0582 Integrase; Belongs to the 'phage' integrase family.	0.463
EAQ07502.1	EAQ05983.1	SKA53_11733	SKA53_07756	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	Hypothetical protein; COG0582 Integrase.	0.463
EAQ07502.1	EAQ07977.1	SKA53_11733	SKA53_09644	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	COG0287 Prephenate dehydrogenase.	0.801
EAQ07502.1	apt	SKA53_11733	SKA53_08371	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.	0.804
EAQ07502.1	xerC	SKA53_11733	SKA53_09629	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	Tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.	0.463
EAQ07977.1	EAQ05386.1	SKA53_09644	SKA53_00380	COG0287 Prephenate dehydrogenase.	Site-specific recombinase XerD-like; COG0582 Integrase; Belongs to the 'phage' integrase family.	0.417