Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05403.1ABC transporter, ATPase subunit; COG1136 ABC-type antimicrobial peptide transport system, ATPase component. (219 aa)    
Predicted Functional Partners:
EAQ05404.1
Permease, putative; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 0.994
EAQ07075.1
COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
  
 0.985
EAQ05405.1
Hypothetical protein; COG5621 Predicted secreted hydrolase.
 
   
 0.936
EAQ05398.1
Putative outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.781
EAQ05406.1
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding; COG0259 Pyridoxamine-phosphate oxidase.
       0.776
EAQ05407.1
Selenide, water dikinase, putative; COG1252 NADH dehydrogenase, FAD-containing subunit.
 
     0.752
EAQ05795.1
ABC transporter, inner membrane subunit; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
    
 0.682
EAQ07844.1
ABC transporter, permease protein; COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.
  
 
 0.587
EAQ07709.1
Putative periplasmic iron-binding protein; COG0642 Signal transduction histidine kinase.
   
 0.580
pheS
COG0016 Phenylalanyl-tRNA synthetase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.560
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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