Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ05405.1Hypothetical protein; COG5621 Predicted secreted hydrolase. (341 aa)    
Predicted Functional Partners:
EAQ05404.1
Permease, putative; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
     0.962
EAQ05403.1
ABC transporter, ATPase subunit; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
   
 0.936
EAQ05406.1
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding; COG0259 Pyridoxamine-phosphate oxidase.
       0.809
EAQ05407.1
Selenide, water dikinase, putative; COG1252 NADH dehydrogenase, FAD-containing subunit.
 
     0.801
EAQ07844.1
ABC transporter, permease protein; COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.
  
    0.589
EAQ05402.1
Beta-ketothiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.533
EAQ06691.1
Hypothetical protein.
  
     0.508
EAQ07578.1
Spheroidene monooxygenase.
   
 
  0.401
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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