STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05409.1Putative aldose 1-epimerase protein; COG2017 Galactose mutarotase and related enzymes. (313 aa)    
Predicted Functional Partners:
EAQ05410.1
Putative beta-galactosidase protein; COG1874 Beta-galactosidase.
  
 
 0.971
EAQ05415.1
COG3345 Alpha-galactosidase.
 
 
 0.961
EAQ05412.1
COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
  
 0.919
EAQ05414.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  
  0.911
EAQ08187.1
D-galactose 1-dehydrogenase, hypothetical; COG0673 Predicted dehydrogenases and related proteins.
 
 
  0.889
EAQ05411.1
Smp-30/Cgr1 family protein; COG3386 Gluconolactonase.
 
  
 0.869
EAQ07714.1
COG1087 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 0.861
EAQ05202.1
COG0837 Glucokinase; Belongs to the bacterial glucokinase family.
    
 0.842
EAQ05413.1
Putative 2-dehydro-3-deoxygalactonokinase; COG3734 2-keto-3-deoxy-galactonokinase.
 
     0.810
EAQ06682.1
HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; COG1011 Predicted hydrolase (HAD superfamily).
   
 
  0.704
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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