STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ05414.1Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (252 aa)    
Predicted Functional Partners:
EAQ05410.1
Putative beta-galactosidase protein; COG1874 Beta-galactosidase.
 
  
  0.926
EAQ05409.1
Putative aldose 1-epimerase protein; COG2017 Galactose mutarotase and related enzymes.
 
  
  0.911
EAQ05413.1
Putative 2-dehydro-3-deoxygalactonokinase; COG3734 2-keto-3-deoxy-galactonokinase.
 
     0.892
EAQ05411.1
Smp-30/Cgr1 family protein; COG3386 Gluconolactonase.
 
 
  0.881
EAQ05415.1
COG3345 Alpha-galactosidase.
 
  
  0.878
EAQ08212.1
Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.
     
 0.869
EAQ05467.1
COG2124 Cytochrome P450.
   
 0.833
EAQ05412.1
COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
    0.823
EAQ05416.1
COG0395 ABC-type sugar transport system, permease component.
       0.776
EAQ08187.1
D-galactose 1-dehydrogenase, hypothetical; COG0673 Predicted dehydrogenases and related proteins.
  
  
  0.755
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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