Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ05532.1Hypothetical protein; COG1414 Transcriptional regulator. (264 aa)    
Predicted Functional Partners:
EAQ05531.1
ABC transporter, substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
    0.840
EAQ06755.1
COG2049 Allophanate hydrolase subunit 1.
  
    0.815
EAQ06754.1
Urea amidolyase-like protein; COG1984 Allophanate hydrolase subunit 2.
  
    0.799
EAQ05533.1
Hypothetical protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
       0.776
EAQ05231.1
Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
  0.762
EAQ07315.1
COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
    
  0.735
EAQ05534.1
COG1171 Threonine dehydratase.
  
    0.672
EAQ05415.1
COG3345 Alpha-galactosidase.
 
     0.612
EAQ05411.1
Smp-30/Cgr1 family protein; COG3386 Gluconolactonase.
     0.585
EAQ05410.1
Putative beta-galactosidase protein; COG1874 Beta-galactosidase.
 
     0.547
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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