EAQ05536.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ05536.1

Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1. (253 aa)

Predicted Functional Partners:

EAQ05538.1

0.999

EAQ05535.1

0.990

EAQ07868.1

0.987

EAQ07870.1

0.920

EAQ07078.1

0.917

EAQ06177.1

0.917

EAQ07315.1

0.892

EAQ07865.1

0.891

tuf

0.891

EAQ07818.1

0.891

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05535.1	EAQ05536.1	SKA53_00574	SKA53_00579	Dimethyl sulfoxide reductase, C subunit, putative; COG3302 DMSO reductase anchor subunit.	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	0.990
EAQ05535.1	EAQ05538.1	SKA53_00574	SKA53_00589	Dimethyl sulfoxide reductase, C subunit, putative; COG3302 DMSO reductase anchor subunit.	Oxidoreductase, molybdopterin-binding; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.994
EAQ05535.1	EAQ07315.1	SKA53_00574	SKA53_02926	Dimethyl sulfoxide reductase, C subunit, putative; COG3302 DMSO reductase anchor subunit.	COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.	0.589
EAQ05536.1	EAQ05535.1	SKA53_00579	SKA53_00574	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	Dimethyl sulfoxide reductase, C subunit, putative; COG3302 DMSO reductase anchor subunit.	0.990
EAQ05536.1	EAQ05538.1	SKA53_00579	SKA53_00589	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	Oxidoreductase, molybdopterin-binding; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.999
EAQ05536.1	EAQ06177.1	SKA53_00579	SKA53_08726	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	Cbb3-type cytochrome c oxidase CcoP subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.917
EAQ05536.1	EAQ07078.1	SKA53_00579	SKA53_01741	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.	0.917
EAQ05536.1	EAQ07315.1	SKA53_00579	SKA53_02926	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.	0.892
EAQ05536.1	EAQ07818.1	SKA53_00579	SKA53_13313	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	COG0050 GTPases - translation elongation factors.	0.891
EAQ05536.1	EAQ07865.1	SKA53_00579	SKA53_09084	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	Hypothetical protein; COG2319 FOG: WD40 repeat.	0.891
EAQ05536.1	EAQ07868.1	SKA53_00579	SKA53_09099	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	COG2864 Cytochrome b subunit of formate dehydrogenase.	0.987
EAQ05536.1	EAQ07870.1	SKA53_00579	SKA53_09109	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	Formate dehydrogenase, alpha subunit, putative; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.920
EAQ05536.1	tuf	SKA53_00579	SKA53_13223	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.891
EAQ05538.1	EAQ05535.1	SKA53_00589	SKA53_00574	Oxidoreductase, molybdopterin-binding; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Dimethyl sulfoxide reductase, C subunit, putative; COG3302 DMSO reductase anchor subunit.	0.994
EAQ05538.1	EAQ05536.1	SKA53_00589	SKA53_00579	Oxidoreductase, molybdopterin-binding; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Iron-sulfur cluster-binding protein; COG0437 Fe-S-cluster-containing hydrogenase components 1.	0.999
EAQ05538.1	EAQ06177.1	SKA53_00589	SKA53_08726	Oxidoreductase, molybdopterin-binding; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Cbb3-type cytochrome c oxidase CcoP subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.968
EAQ05538.1	EAQ07078.1	SKA53_00589	SKA53_01741	Oxidoreductase, molybdopterin-binding; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.	0.981
EAQ05538.1	EAQ07315.1	SKA53_00589	SKA53_02926	Oxidoreductase, molybdopterin-binding; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.	0.922
EAQ05538.1	EAQ07818.1	SKA53_00589	SKA53_13313	Oxidoreductase, molybdopterin-binding; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	COG0050 GTPases - translation elongation factors.	0.951
EAQ05538.1	EAQ07865.1	SKA53_00589	SKA53_09084	Oxidoreductase, molybdopterin-binding; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hypothetical protein; COG2319 FOG: WD40 repeat.	0.964