Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EAQ05547.1 | EAQ05548.1 | SKA53_00634 | SKA53_00639 | Hypothetical protein; COG2309 Leucyl aminopeptidase (aminopeptidase T). | NADH-ubiquinone oxidoreductase family protein. | 0.657 |
| EAQ05547.1 | uvrB | SKA53_00634 | SKA53_00629 | Hypothetical protein; COG2309 Leucyl aminopeptidase (aminopeptidase T). | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] | 0.568 |
| EAQ05548.1 | EAQ05547.1 | SKA53_00639 | SKA53_00634 | NADH-ubiquinone oxidoreductase family protein. | Hypothetical protein; COG2309 Leucyl aminopeptidase (aminopeptidase T). | 0.657 |
| EAQ05548.1 | EAQ05654.1 | SKA53_00639 | SKA53_06107 | NADH-ubiquinone oxidoreductase family protein. | NADH dehydrogenase gamma subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | 0.684 |
| EAQ05548.1 | EAQ06087.1 | SKA53_00639 | SKA53_08276 | NADH-ubiquinone oxidoreductase family protein. | COG3474 Cytochrome c2. | 0.620 |
| EAQ05548.1 | EAQ06111.1 | SKA53_00639 | SKA53_08396 | NADH-ubiquinone oxidoreductase family protein. | Surf1 protein. | 0.567 |
| EAQ05548.1 | EAQ06367.1 | SKA53_00639 | SKA53_04748 | NADH-ubiquinone oxidoreductase family protein. | Hypothetical protein; COG0500 SAM-dependent methyltransferases. | 0.834 |
| EAQ05548.1 | EAQ06564.1 | SKA53_00639 | SKA53_13491 | NADH-ubiquinone oxidoreductase family protein. | Hypothetical protein; COG5387 Chaperone required for the assembly of the mitochondrial F1-ATPase. | 0.614 |
| EAQ05548.1 | EAQ07156.1 | SKA53_00639 | SKA53_02131 | NADH-ubiquinone oxidoreductase family protein. | COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit. | 0.793 |
| EAQ05548.1 | EAQ07503.1 | SKA53_00639 | SKA53_11738 | NADH-ubiquinone oxidoreductase family protein. | Hypothetical protein; COG0500 SAM-dependent methyltransferases. | 0.741 |
| EAQ05548.1 | EAQ07540.1 | SKA53_00639 | SKA53_11923 | NADH-ubiquinone oxidoreductase family protein. | COG4395 Uncharacterized protein conserved in bacteria. | 0.608 |
| EAQ05548.1 | uvrB | SKA53_00639 | SKA53_00629 | NADH-ubiquinone oxidoreductase family protein. | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] | 0.647 |
| EAQ05654.1 | EAQ05548.1 | SKA53_06107 | SKA53_00639 | NADH dehydrogenase gamma subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | NADH-ubiquinone oxidoreductase family protein. | 0.684 |
| EAQ05654.1 | EAQ06087.1 | SKA53_06107 | SKA53_08276 | NADH dehydrogenase gamma subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | COG3474 Cytochrome c2. | 0.580 |
| EAQ05654.1 | EAQ07156.1 | SKA53_06107 | SKA53_02131 | NADH dehydrogenase gamma subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit. | 0.514 |
| EAQ05654.1 | EAQ07503.1 | SKA53_06107 | SKA53_11738 | NADH dehydrogenase gamma subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | Hypothetical protein; COG0500 SAM-dependent methyltransferases. | 0.643 |
| EAQ06087.1 | EAQ05548.1 | SKA53_08276 | SKA53_00639 | COG3474 Cytochrome c2. | NADH-ubiquinone oxidoreductase family protein. | 0.620 |
| EAQ06087.1 | EAQ05654.1 | SKA53_08276 | SKA53_06107 | COG3474 Cytochrome c2. | NADH dehydrogenase gamma subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | 0.580 |
| EAQ06087.1 | EAQ06111.1 | SKA53_08276 | SKA53_08396 | COG3474 Cytochrome c2. | Surf1 protein. | 0.797 |
| EAQ06087.1 | EAQ07156.1 | SKA53_08276 | SKA53_02131 | COG3474 Cytochrome c2. | COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit. | 0.492 |
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