STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05556.1Possible phage-related integrase; COG0582 Integrase; Belongs to the 'phage' integrase family. (386 aa)    
Predicted Functional Partners:
EAQ06935.1
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.644
EAQ05499.1
Putative phage integrase; COG0582 Integrase; Belongs to the 'phage' integrase family.
 
     0.503
EAQ07502.1
Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.
   
    0.463
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.459
EAQ05553.1
DNA primase domain protein; COG5519 Superfamily II helicase and inactivated derivatives.
       0.451
EAQ05554.1
Hypothetical protein; COG0554 Glycerol kinase.
       0.451
EAQ05555.1
Hypothetical protein; COG3311 Predicted transcriptional regulator.
       0.451
EAQ07977.1
COG0287 Prephenate dehydrogenase.
  
    0.417
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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