STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05564.1Hypothetical protein; COG2186 Transcriptional regulators. (230 aa)    
Predicted Functional Partners:
EAQ06052.1
Regulatory protein GntR, HTH:GntR, C-terminal; COG1802 Transcriptional regulators.
  
  
 0.617
EAQ05338.1
Putative transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
  
 0.612
EAQ05562.1
ABC transporter, periplasmic binding protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
     0.572
EAQ06249.1
Transcriptional regulator, GntR family; COG2188 Transcriptional regulators.
  
    0.521
EAQ05563.1
Putative enzyme; COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
       0.518
EAQ05560.1
ABC transporter, inner membrane subunit; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
     0.484
EAQ05781.1
Transcriptional regulator, GntR family; COG2188 Transcriptional regulators.
  
    0.465
EAQ08245.1
Transcriptional regulatory protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.430
EAQ06948.1
Putative aromatic-ring hydroxylating dioxygenase, alpha-subunit; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
    
 0.420
EAQ05467.1
COG2124 Cytochrome P450.
    
  0.411
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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