Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ05570.1COG2268 Uncharacterized protein conserved in bacteria. (522 aa)    
Predicted Functional Partners:
EAQ05571.1
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.860
EAQ05577.1
Putative branched-chain amino acid transporter substrate-binding protein; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.857
EAQ05575.1
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.831
EAQ08124.1
Conserved hypoothetical protein; COG1585 Membrane protein implicated in regulation of membrane protease activity.
  
  
 0.825
EAQ05572.1
COG1012 NAD-dependent aldehyde dehydrogenases.
 
 
  0.823
EAQ05576.1
COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
     0.774
EAQ05574.1
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
     0.768
EAQ05579.1
Transcriptional regulator, AraC family; COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.719
EAQ05573.1
Putative branched-chain amino acid transporter ATP-binding protein; COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
     0.690
EAQ08068.1
Hypothetical protein.
    
 0.422
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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