Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05579.1Transcriptional regulator, AraC family; COG2207 AraC-type DNA-binding domain-containing proteins. (303 aa)    
Predicted Functional Partners:
EAQ05577.1
Putative branched-chain amino acid transporter substrate-binding protein; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
  
  0.839
EAQ08212.1
Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.
    
 0.838
EAQ05571.1
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.751
EAQ05570.1
COG2268 Uncharacterized protein conserved in bacteria.
 
     0.719
ribB
Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.717
EAQ07926.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
   
 
 0.715
EAQ07520.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
   
 
 0.715
EAQ05575.1
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.674
EAQ05574.1
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
     0.654
EAQ05578.1
Hypothetical protein; COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
 
     0.645
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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