Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ05582.1Hypothetical protein. (278 aa)    
Predicted Functional Partners:
EAQ05583.1
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
     0.815
EAQ05585.1
4-carboxymuconolactone decarboxylase; COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
    
  0.814
EAQ05581.1
Beta-ketoadipate enol-lactone hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
    
  0.806
EAQ05584.1
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
       0.785
EAQ05580.1
3-carboxy-cis,cis-muconate cycloisomerase; COG0015 Adenylosuccinate lyase.
       0.706
EAQ05586.1
4-hydroxybenzoate 3-monooxygenase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
       0.644
lcdH
3-hydroxybutyryl-CoA dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.628
EAQ05587.1
Pca operon transcriptional activator PcaQ; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.524
EAQ05475.1
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
    
  0.427
EAQ06122.1
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
    
  0.427
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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