Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05598.1Bacterial regulatory protein, MarR; COG1846 Transcriptional regulators. (160 aa)    
Predicted Functional Partners:
EAQ05596.1
feruloyl-CoA synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
     0.932
EAQ05599.1
Hypothetical protein; Belongs to the UPF0311 family.
 
    0.898
EAQ05597.1
Possible 3-hydroxyacyl-CoA dehydrogenase type II; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.832
EAQ05591.1
Hypothetical protein; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
     0.829
EAQ05592.1
COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.614
EAQ05590.1
COG2124 Cytochrome P450.
  
     0.555
EAQ05588.1
Hypothetical protein; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
  
    0.526
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
  
  
 0.499
EAQ08003.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.461
EAQ05618.1
Hypothetical protein.
  
  
  0.443
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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