Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05604.1Hypothetical protein. (279 aa)    
Predicted Functional Partners:
lcdH
3-hydroxybutyryl-CoA dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.970
EAQ05602.1
COG1960 Acyl-CoA dehydrogenases.
 
     0.819
EAQ05605.1
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
     0.644
EAQ05601.1
COG1042 Acyl-CoA synthetase (NDP forming).
 
     0.634
EAQ05600.1
carnitinyl-CoA dehydratase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.514
EAQ05475.1
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
    
  0.427
EAQ06122.1
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
    
  0.427
EAQ06069.1
COG1454 Alcohol dehydrogenase, class IV.
     
  0.419
EAQ08108.1
COG1454 Alcohol dehydrogenase, class IV.
     
  0.419
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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