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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05604.1Hypothetical protein. (279 aa)    
Predicted Functional Partners:
lcdH
3-hydroxybutyryl-CoA dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.965
EAQ05602.1
COG1960 Acyl-CoA dehydrogenases.
 
     0.820
EAQ05605.1
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
     0.645
EAQ05601.1
COG1042 Acyl-CoA synthetase (NDP forming).
 
     0.630
EAQ05475.1
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
    
  0.547
EAQ06122.1
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
    
  0.547
EAQ05600.1
carnitinyl-CoA dehydratase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
     0.515
EAQ05476.1
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
    
  0.481
EAQ05477.1
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
    
  0.481
EAQ06121.1
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
    
  0.481
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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