STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05608.1Transcriptional regulator, TetR family; COG1309 Transcriptional regulator. (209 aa)    
Predicted Functional Partners:
EAQ05607.1
Aspartate aminotransferase, putative; COG0436 Aspartate/tyrosine/aromatic aminotransferase.
 
     0.892
EAQ05609.1
Hypothetical protein; COG1834 N-Dimethylarginine dimethylaminohydrolase.
 
     0.892
EAQ05606.1
Hypothetical protein; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family.
 
     0.879
EAQ05610.1
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
   0.834
EAQ05612.1
Polar amino acid uptake family ABC transporter, permease protein; COG4160 ABC-type arginine/histidine transport system, permease component.
 
     0.751
EAQ05611.1
Polar amino acid uptake family ABC transporter, permease protein; COG4215 ABC-type arginine transport system, permease component.
 
     0.706
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
    
 
 0.468
lcdH
3-hydroxybutyryl-CoA dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
  
 0.452
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.432
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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