EAQ05616.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ05616.1

Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis. (225 aa)

Predicted Functional Partners:

EAQ05620.1

0.988

EAQ06438.1

0.986

EAQ07715.1

0.984

EAQ07697.1

0.765

gmd

0.662

EAQ06785.1

0.644

EAQ06419.1

0.632

EAQ08148.1

0.618

EAQ06440.1

0.602

EAQ07714.1

0.526

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05616.1	EAQ05620.1	SKA53_00979	SKA53_00999	Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	0.988
EAQ05616.1	EAQ06419.1	SKA53_00979	SKA53_05008	Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Probable polysaccharide biosynthesis related protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.	0.632
EAQ05616.1	EAQ06438.1	SKA53_00979	SKA53_05103	Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	0.986
EAQ05616.1	EAQ06440.1	SKA53_00979	SKA53_05113	Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Hypothetical protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.	0.602
EAQ05616.1	EAQ06785.1	SKA53_00979	SKA53_14596	Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Zinc carboxypeptidase A metalloprotease (M14); COG0438 Glycosyltransferase.	0.644
EAQ05616.1	EAQ07697.1	SKA53_00979	SKA53_12708	Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Putative capsule polysaccharide exporter; COG1596 Periplasmic protein involved in polysaccharide export.	0.765
EAQ05616.1	EAQ07714.1	SKA53_00979	SKA53_12793	Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	COG1087 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.526
EAQ05616.1	EAQ07715.1	SKA53_00979	SKA53_12798	Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	Mannose-6-phosphate isomerase /; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.984
EAQ05616.1	EAQ08148.1	SKA53_00979	SKA53_10499	Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.618
EAQ05616.1	gmd	SKA53_00979	SKA53_12808	Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	NAD-dependent epimerase/dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.	0.662
EAQ05620.1	EAQ05616.1	SKA53_00999	SKA53_00979	Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	Putative glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.	0.988
EAQ05620.1	EAQ06419.1	SKA53_00999	SKA53_05008	Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	Probable polysaccharide biosynthesis related protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.	0.733
EAQ05620.1	EAQ06438.1	SKA53_00999	SKA53_05103	Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	0.893
EAQ05620.1	EAQ06440.1	SKA53_00999	SKA53_05113	Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	Hypothetical protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.	0.660
EAQ05620.1	EAQ06785.1	SKA53_00999	SKA53_14596	Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	Zinc carboxypeptidase A metalloprotease (M14); COG0438 Glycosyltransferase.	0.768
EAQ05620.1	EAQ07697.1	SKA53_00999	SKA53_12708	Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	Putative capsule polysaccharide exporter; COG1596 Periplasmic protein involved in polysaccharide export.	0.998
EAQ05620.1	EAQ07714.1	SKA53_00999	SKA53_12793	Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	COG1087 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.607
EAQ05620.1	EAQ07715.1	SKA53_00999	SKA53_12798	Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	Mannose-6-phosphate isomerase /; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.954
EAQ05620.1	EAQ08148.1	SKA53_00999	SKA53_10499	Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	COG0463 Glycosyltransferases involved in cell wall biogenesis.	0.603
EAQ05620.1	gmd	SKA53_00999	SKA53_12808	Protein-tyrosine kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.	NAD-dependent epimerase/dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.	0.702