Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05618.1Hypothetical protein. (85 aa)    
Predicted Functional Partners:
EAQ05245.1
Hypothetical protein.
   
  0.850
EAQ07715.1
Mannose-6-phosphate isomerase /; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
  0.849
EAQ05246.1
Major capsid protein, HK97 family; COG4653 Predicted phage phi-C31 gp36 major capsid-like protein.
   
   0.816
EAQ05242.1
Major tail protein, TP901-1 family; COG5437 Predicted secreted protein.
   
   0.798
EAQ05237.1
Hypothetical protein.
   
   0.793
EAQ05238.1
Hypothetical protein.
   
   0.793
EAQ05249.1
Putative portal protein; COG4695 Phage-related protein.
   
   0.779
EAQ05619.1
COG3979 Uncharacterized protein contain chitin-binding domain type 3.
       0.776
EAQ05243.1
Hypothetical protein.
    
   0.775
EAQ05244.1
COG5614 Bacteriophage head-tail adaptor.
    
   0.775
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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