Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
EAQ05630.1Mandelate racemase/muconate lactonizing enzyme family protein; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (423 aa)    
Predicted Functional Partners:
EAQ05413.1
Putative 2-dehydro-3-deoxygalactonokinase; COG3734 2-keto-3-deoxy-galactonokinase.
 
 
 0.949
EAQ07381.1
COG0246 Mannitol-1-phosphate/altronate dehydrogenases.
 
  
 0.818
EAQ05631.1
Oxidoreductase, zinc-binding dehydrogenase family; COG1062 Zn-dependent alcohol dehydrogenases, class III.
 
     0.792
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.699
EAQ08032.1
COG0036 Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
  0.699
EAQ05632.1
Tetracycline resistance protein; COG0477 Permeases of the major facilitator superfamily.
       0.692
EAQ07001.1
COG3239 Fatty acid desaturase.
  
     0.680
EAQ05637.1
Haloacid dehalogenase, type II; COG1011 Predicted hydrolase (HAD superfamily).
 
     0.666
EAQ05629.1
Hypothetical protein; COG3773 Cell wall hydrolyses involved in spore germination.
       0.661
EAQ05636.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
    
  0.618
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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