STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05638.1COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2. (144 aa)    
Predicted Functional Partners:
rpsB
COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
   
   0.954
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.943
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
    
 
 0.900
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
    0.695
EAQ05636.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.650
EAQ05637.1
Haloacid dehalogenase, type II; COG1011 Predicted hydrolase (HAD superfamily).
       0.636
EAQ05632.1
Tetracycline resistance protein; COG0477 Permeases of the major facilitator superfamily.
       0.558
EAQ05634.1
3-oxoadipate enol-lactone hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.553
EAQ05407.1
Selenide, water dikinase, putative; COG1252 NADH dehydrogenase, FAD-containing subunit.
 
    0.542
EAQ05633.1
Esterase EstC, putative; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.537
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.