Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ06970.1Hypothetical protein; COG1455 Phosphotransferase system cellobiose-specific component IIC. (118 aa)    
Predicted Functional Partners:
trpF
COG0135 Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
       0.853
ihfB
Integration host factor beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.846
EAQ06922.1
Hypothetical protein.
  
     0.737
trpB
Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.734
EAQ07919.1
Hypothetical protein.
  
     0.716
EAQ06794.1
ATPase; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
  
     0.693
EAQ07281.1
COG1426 Uncharacterized protein conserved in bacteria.
  
     0.688
EAQ07131.1
Hypothetical protein.
  
     0.649
EAQ06707.1
Lipoprotein, putative.
  
     0.645
EAQ07641.1
Hypothetical protein.
  
     0.643
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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