Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06974.1Hypothetical protein. (158 aa)    
Predicted Functional Partners:
EAQ06975.1
Transcriptional regulator, LuxR family; COG2771 DNA-binding HTH domain-containing proteins.
 
     0.883
EAQ05761.1
Hypothetical protein; COG2771 DNA-binding HTH domain-containing proteins.
 
     0.795
EAQ06973.1
COG3212 Predicted membrane protein.
 
    
0.739
EAQ06037.1
Transcriptional regulator, LuxR family; COG2771 DNA-binding HTH domain-containing proteins.
 
     0.675
EAQ06738.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
     0.445
trpB
Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.432
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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