STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06985.1Possible glycosyltransferase; COG3754 Lipopolysaccharide biosynthesis protein. (375 aa)    
Predicted Functional Partners:
EAQ06987.1
Hypothetical protein; COG3306 Glycosyltransferase involved in LPS biosynthesis.
  
     0.651
mnmE
tRNA modification GTPase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
    0.625
EAQ06986.1
Hypothetical protein of glycosyltransferase family; COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases.
       0.558
EAQ06093.1
COG0381 UDP-N-acetylglucosamine 2-epimerase.
 
    0.523
EAQ06988.1
Polysialic acid capsule biosynthesis protein SiaC; COG2089 Sialic acid synthase.
 
     0.426
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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