STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06987.1Hypothetical protein; COG3306 Glycosyltransferase involved in LPS biosynthesis. (256 aa)    
Predicted Functional Partners:
EAQ06988.1
Polysialic acid capsule biosynthesis protein SiaC; COG2089 Sialic acid synthase.
 
     0.897
EAQ06985.1
Possible glycosyltransferase; COG3754 Lipopolysaccharide biosynthesis protein.
  
     0.651
EAQ06990.1
Acylneuraminate cytidylyltransferase; COG1083 CMP-N-acetylneuraminic acid synthetase.
 
     0.632
EAQ06093.1
COG0381 UDP-N-acetylglucosamine 2-epimerase.
  
     0.566
EAQ06989.1
COG2365 Protein tyrosine/serine phosphatase.
       0.534
EAQ06095.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
     0.526
EAQ07633.1
Hypothetical protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
     0.422
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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