Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07007.1Hypothetical protein. (147 aa)    
Predicted Functional Partners:
EAQ07006.1
Hypothetical protein.
 
     0.956
EAQ07005.1
Sigma-24; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.903
EAQ05458.1
Tellurite resistance protein.
  
     0.660
EAQ06285.1
Hypothetical protein.
  
     0.639
EAQ06919.1
Hypothetical protein.
  
     0.639
EAQ07164.1
Hypothetical protein.
  
     0.581
EAQ07919.1
Hypothetical protein.
  
     0.567
EAQ08037.1
Hypothetical protein.
  
     0.565
EAQ07004.1
RNA polymerase sigma-70 factor.
       0.563
EAQ07291.1
Hypothetical protein.
  
     0.555
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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