Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
EAQ07038.1Transcriptional regulator, LysR family; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (289 aa)    
Predicted Functional Partners:
EAQ07036.1
Hypothetical protein.
 
     0.646
EAQ07037.1
Hypothetical protein.
       0.645
EAQ08212.1
Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.
     
 0.602
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.448
EAQ06318.1
Transcriptional regulator, TetR family; COG1309 Transcriptional regulator.
  
 
   0.427
EAQ07301.1
Transcriptional regulator, LysR family; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.416
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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