STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07051.1ABC glycine betaine/L-proline transporter, inner membrane subunit; COG4176 ABC-type proline/glycine betaine transport system, permease component. (277 aa)    
Predicted Functional Partners:
EAQ07050.1
ABC glycine betaine/L-proline transporter, ATPase subunit, ProV; COG4175 ABC-type proline/glycine betaine transport system, ATPase component.
 0.999
EAQ07052.1
Putative glycine betaine-binding ABC transporter protein; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
 0.999
betI
Transcriptional regulator, BetI; Repressor involved in choline regulation of the bet genes.
 
     0.774
EAQ07056.1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
  
 0.530
EAQ05421.1
COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN.
   
    0.499
EAQ07054.1
COG3119 Arylsulfatase A and related enzymes.
 
     0.489
EAQ07055.1
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
     0.440
fhs
Formate--tetrahydrofolate ligase; COG2759 Formyltetrahydrofolate synthetase; Belongs to the formate--tetrahydrofolate ligase family.
      
 0.416
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.414
purM
COG0150 Phosphoribosylaminoimidazole (AIR) synthetase.
   
    0.406
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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