STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betITranscriptional regulator, BetI; Repressor involved in choline regulation of the bet genes. (189 aa)    
Predicted Functional Partners:
EAQ07052.1
Putative glycine betaine-binding ABC transporter protein; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
     0.920
EAQ07054.1
COG3119 Arylsulfatase A and related enzymes.
 
   
 0.888
EAQ07056.1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
 
 0.869
EAQ07050.1
ABC glycine betaine/L-proline transporter, ATPase subunit, ProV; COG4175 ABC-type proline/glycine betaine transport system, ATPase component.
 
     0.817
EAQ07051.1
ABC glycine betaine/L-proline transporter, inner membrane subunit; COG4176 ABC-type proline/glycine betaine transport system, permease component.
 
     0.774
EAQ07055.1
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
  
 0.748
EAQ07057.1
COG1525 Micrococcal nuclease (thermonuclease) homologs.
       0.573
EAQ08117.1
Oxidoreductase, GMC family; COG2303 Choline dehydrogenase and related flavoproteins.
 
 
 0.524
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
    
 
 0.468
EAQ07343.1
COG1278 Cold shock proteins.
      
 0.449
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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