Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
betITranscriptional regulator, BetI; Repressor involved in choline regulation of the bet genes. (189 aa)    
Predicted Functional Partners:
EAQ07052.1
Putative glycine betaine-binding ABC transporter protein; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
     0.919
EAQ07054.1
COG3119 Arylsulfatase A and related enzymes.
 
   
 0.886
EAQ07056.1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
 
 0.847
EAQ07050.1
ABC glycine betaine/L-proline transporter, ATPase subunit, ProV; COG4175 ABC-type proline/glycine betaine transport system, ATPase component.
 
     0.834
EAQ07051.1
ABC glycine betaine/L-proline transporter, inner membrane subunit; COG4176 ABC-type proline/glycine betaine transport system, permease component.
 
     0.796
EAQ07055.1
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
  
 0.726
EAQ07057.1
COG1525 Micrococcal nuclease (thermonuclease) homologs.
       0.566
EAQ05467.1
COG2124 Cytochrome P450.
  
 
 0.553
EAQ06947.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.489
EAQ08117.1
Oxidoreductase, GMC family; COG2303 Choline dehydrogenase and related flavoproteins.
 
 
 0.446
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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