Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ07059.1DNA-binding protein, putative; COG1396 Predicted transcriptional regulators. (466 aa)    
Predicted Functional Partners:
nadE
NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.697
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
   
 0.684
EAQ07060.1
Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.
       0.667
EAQ07061.1
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
     
 0.524
EAQ07058.1
Carbon monoxide dehydrogenase operon G protein.
       0.508
EAQ07926.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
     
  0.490
EAQ07520.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
     
  0.490
EAQ07165.1
Sensor histidine kinase; COG0591 Na+/proline symporter.
 
     0.460
EAQ07326.1
COG0372 Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.440
EAQ07878.1
COG1145 Ferredoxin.
     
  0.437
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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