EAQ07060.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ07060.1

Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily. (385 aa)

Predicted Functional Partners:

EAQ06946.1

0.692

EAQ07059.1

0.667

EAQ07061.1

0.444

EAQ06728.1

0.441

EAQ07062.1

0.421

EAQ05231.1

0.417

EAQ08212.1

0.414

EAQ06351.1

0.413

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05231.1	EAQ06946.1	SKA53_05630	SKA53_15401	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Probable 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.511
EAQ05231.1	EAQ07060.1	SKA53_05630	SKA53_01651	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	0.417
EAQ05231.1	EAQ07061.1	SKA53_05630	SKA53_01656	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.659
EAQ05231.1	EAQ08212.1	SKA53_05630	SKA53_10819	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.	0.889
EAQ06351.1	EAQ07060.1	SKA53_04668	SKA53_01651	DSBA-like thioredoxin family protein; COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	0.413
EAQ06728.1	EAQ07060.1	SKA53_14311	SKA53_01651	Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	0.441
EAQ06946.1	EAQ05231.1	SKA53_15401	SKA53_05630	Probable 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.511
EAQ06946.1	EAQ07060.1	SKA53_15401	SKA53_01651	Probable 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	0.692
EAQ06946.1	EAQ08212.1	SKA53_15401	SKA53_10819	Probable 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.	0.448
EAQ07059.1	EAQ07060.1	SKA53_01646	SKA53_01651	DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	0.667
EAQ07059.1	EAQ07061.1	SKA53_01646	SKA53_01656	DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.524
EAQ07060.1	EAQ05231.1	SKA53_01651	SKA53_05630	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.417
EAQ07060.1	EAQ06351.1	SKA53_01651	SKA53_04668	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	DSBA-like thioredoxin family protein; COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.	0.413
EAQ07060.1	EAQ06728.1	SKA53_01651	SKA53_14311	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.	0.441
EAQ07060.1	EAQ06946.1	SKA53_01651	SKA53_15401	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	Probable 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.692
EAQ07060.1	EAQ07059.1	SKA53_01651	SKA53_01646	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.	0.667
EAQ07060.1	EAQ07061.1	SKA53_01651	SKA53_01656	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.444
EAQ07060.1	EAQ07062.1	SKA53_01651	SKA53_01661	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	Hypothetical protein.	0.421
EAQ07060.1	EAQ08212.1	SKA53_01651	SKA53_10819	Multidrug efflux pump, major facilitator superfamily (MFS); COG0477 Permeases of the major facilitator superfamily.	Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.	0.414
EAQ07061.1	EAQ05231.1	SKA53_01656	SKA53_05630	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.659