Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07100.1Transcriptional regulator, MarR family; COG1846 Transcriptional regulators. (173 aa)    
Predicted Functional Partners:
EAQ07099.1
TPR repeat family protein.
 
     0.791
EAQ06667.1
Hypothetical protein.
  
     0.728
EAQ07098.1
Transcriptional regulator, XRE family; COG1396 Predicted transcriptional regulators.
   
   0.725
EAQ07461.1
Putative S-adenosyl L-homocystein hydrolase; COG1896 Predicted hydrolases of HD superfamily.
  
     0.608
EAQ07385.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.605
fliP
Flagellar transport protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
   
    0.571
EAQ07502.1
Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.
  
    0.550
EAQ06118.1
DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
   
    0.549
EAQ07157.1
COG4765 Uncharacterized protein conserved in bacteria.
  
     0.533
EAQ06325.1
Hypothetical protein.
  
    0.532
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
Server load: low (34%) [HD]
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