STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07108.1Hypothetical protein. (202 aa)    
Predicted Functional Partners:
EAQ07110.1
Hypothetical protein.
 
    0.992
EAQ06132.1
Type II/IV secretion system protein, TadC subfamily; COG2064 Flp pilus assembly protein TadC.
 
    0.976
EAQ06131.1
COG4965 Flp pilus assembly protein TadB.
 
  
 0.973
EAQ07109.1
Hypothetical protein.
 
    0.972
EAQ07166.1
Possible flagellar switch protein FliM; COG0477 Permeases of the major facilitator superfamily.
  
    0.898
EAQ06126.1
CpaB family protein; COG3745 Flp pilus assembly protein CpaB.
 
  
 0.866
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
   
    0.851
EAQ06129.1
ATPase, putative; COG0784 FOG: CheY-like receiver.
 
  
 0.845
fliQ
Flagellar protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
   
    0.841
EAQ06136.1
Hypothetical protein; COG0606 Predicted ATPase with chaperone activity.
 
    0.805
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.