Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07137.1Hypothetical protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing. (336 aa)    
Predicted Functional Partners:
EAQ07136.1
DNA ligase; COG1793 ATP-dependent DNA ligase.
 
 0.996
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.901
EAQ07865.1
Hypothetical protein; COG2319 FOG: WD40 repeat.
   
 0.896
EAQ06137.1
ATP-dependent helicase, DEAD/DEAH box family; COG1201 Lhr-like helicases.
 
    0.810
EAQ06138.1
Hypothetical protein; COG1407 Predicted ICC-like phosphoesterases.
 
     0.801
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.759
EAQ07135.1
COG1164 Oligoendopeptidase F.
  
    0.717
EAQ05959.1
Hypothetical protein.
   
  0.689
EAQ07138.1
Hydrolase, alpha/beta fold family; COG2267 Lysophospholipase.
       0.649
EAQ07139.1
COG3255 putative sterol carrier protein.
       0.647
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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