Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ07139.1COG3255 putative sterol carrier protein. (96 aa)    
Predicted Functional Partners:
EAQ07138.1
Hydrolase, alpha/beta fold family; COG2267 Lysophospholipase.
 
     0.878
EAQ07516.1
COG3255 putative sterol carrier protein.
  
     0.703
EAQ07141.1
Helicase, putative; COG0513 Superfamily II DNA and RNA helicases.
       0.666
EAQ07142.1
S4 domain protein; COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).
       0.666
EAQ07137.1
Hypothetical protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
       0.647
EAQ07136.1
DNA ligase; COG1793 ATP-dependent DNA ligase.
       0.641
EAQ07143.1
Iron-sulfur cluster-binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.607
EAQ07135.1
COG1164 Oligoendopeptidase F.
       0.576
EAQ07140.1
Hypothetical protein; COG0457 FOG: TPR repeat.
       0.537
EAQ06922.1
Hypothetical protein.
  
     0.488
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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