STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07141.1Helicase, putative; COG0513 Superfamily II DNA and RNA helicases. (924 aa)    
Predicted Functional Partners:
EAQ07142.1
S4 domain protein; COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog).
       0.855
EAQ07144.1
COG1329 Transcriptional regulators, similar to M. xanthus CarD.
 
     0.801
EAQ07143.1
Iron-sulfur cluster-binding protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.757
EAQ07140.1
Hypothetical protein; COG0457 FOG: TPR repeat.
       0.689
EAQ07139.1
COG3255 putative sterol carrier protein.
       0.669
EAQ07138.1
Hydrolase, alpha/beta fold family; COG2267 Lysophospholipase.
       0.663
EAQ07951.1
Hypothetical protein.
  
     0.616
EAQ05869.1
Cobalt chelatase, pCobT subunit; COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase).
  
     0.584
EAQ05866.1
DnaJ domain protein; COG2214 DnaJ-class molecular chaperone.
  
     0.559
atpF
ATP synthase F0, B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.557
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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