Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07164.1Hypothetical protein. (89 aa)    
Predicted Functional Partners:
EAQ07165.1
Sensor histidine kinase; COG0591 Na+/proline symporter.
 
    0.953
EAQ07163.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.853
EAQ07162.1
Transcriptional regulator, putative; COG1396 Predicted transcriptional regulators.
 
     0.784
EAQ07166.1
Possible flagellar switch protein FliM; COG0477 Permeases of the major facilitator superfamily.
 
     0.781
EAQ05947.1
Phasin, PhaP.
  
     0.641
EAQ05458.1
Tellurite resistance protein.
  
     0.592
EAQ07007.1
Hypothetical protein.
  
     0.581
EAQ06919.1
Hypothetical protein.
  
     0.542
EAQ07108.1
Hypothetical protein.
  
     0.536
EAQ06518.1
Hypothetical protein.
  
     0.515
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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