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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07176.1COG3750 Uncharacterized protein conserved in bacteria. (86 aa)    
Predicted Functional Partners:
EAQ05443.1
COG3814 Uncharacterized protein conserved in bacteria.
  
   
 0.777
EAQ07175.1
Hypothetical protein.
 
     0.756
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.743
EAQ06464.1
COG2927 DNA polymerase III, chi subunit.
  
     0.717
EAQ06906.1
COG3820 Uncharacterized protein conserved in bacteria.
  
   
 0.689
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
     0.644
EAQ07093.1
Hypothetical protein.
  
     0.582
EAQ06827.1
COG3807 Uncharacterized protein conserved in bacteria.
  
     0.557
EAQ08210.1
COG0625 Glutathione S-transferase.
  
     0.540
EAQ05869.1
Cobalt chelatase, pCobT subunit; COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase).
  
     0.529
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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