Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ07181.1Hypothetical protein; COG3311 Predicted transcriptional regulator. (69 aa)    
Predicted Functional Partners:
EAQ08212.1
Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.
    
  0.838
EAQ07179.1
Symbiosis island integrase; COG0582 Integrase; Belongs to the 'phage' integrase family.
 
  
 0.815
EAQ07066.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
  0.792
EAQ06790.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
  0.792
EAQ07926.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
     
 0.743
EAQ07520.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
     
 0.743
EAQ05354.1
RecA-family ATPase; COG1066 Predicted ATP-dependent serine protease.
 
   
 0.560
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
     
 0.559
EAQ05277.1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 0.537
EAQ07315.1
COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
     
 0.509
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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