Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ07196.1Hypothetical protein; COG1609 Transcriptional regulators. (370 aa)    
Predicted Functional Partners:
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
   
 0.978
EAQ08009.1
COG0642 Signal transduction histidine kinase.
   
 0.916
EAQ07197.1
Putative hydrocarbon oxygenase protein; COG3239 Fatty acid desaturase.
 
     0.890
EAQ07198.1
Putative Rieske-like ferredoxin MocE; COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
 
     0.814
EAQ07185.1
Hypothetical protein; COG4130 Predicted sugar epimerase.
  
     0.763
EAQ07188.1
COG1129 ABC-type sugar transport system, ATPase component.
 
  0.739
EAQ07187.1
Sugar (ribose) ABC transporter (permease); COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
  0.729
EAQ07200.1
COG0413 Ketopantoate hydroxymethyltransferase.
 
     0.677
EAQ05822.1
COG1129 ABC-type sugar transport system, ATPase component.
 
  0.667
EAQ07228.1
ABC sugar transporter, inner membrane subunit; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
  
  0.656
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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