STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07222.1Asp/Glu/Hydantoin racemase family protein; COG3473 Maleate cis-trans isomerase. (240 aa)    
Predicted Functional Partners:
EAQ07223.1
Metallopeptidase, family M24; COG0006 Xaa-Pro aminopeptidase.
 
     0.948
EAQ07224.1
Diaminopropionate ammonia-lyase; COG1171 Threonine dehydratase.
 
     0.945
EAQ06245.1
Isochorismatase family protein; COG1335 Amidases related to nicotinamidase.
    
 0.864
EAQ06783.1
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 
  0.852
EAQ06243.1
3-ketosteroid dehydrogenase, putative; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
   
 
  0.851
EAQ05329.1
Asp/Glu racemase; COG3473 Maleate cis-trans isomerase.
  
  
 
0.755
EAQ07225.1
Hypothetical protein; COG1522 Transcriptional regulators.
       0.530
EAQ06266.1
N-methylproline demethylase, putative; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
 
  
  0.509
EAQ07886.1
Hypothetical protein; COG0006 Xaa-Pro aminopeptidase.
 
     0.433
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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