Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ07223.1Metallopeptidase, family M24; COG0006 Xaa-Pro aminopeptidase. (388 aa)    
Predicted Functional Partners:
EAQ07222.1
Asp/Glu/Hydantoin racemase family protein; COG3473 Maleate cis-trans isomerase.
 
     0.947
EAQ07224.1
Diaminopropionate ammonia-lyase; COG1171 Threonine dehydratase.
 
     0.941
EAQ06266.1
N-methylproline demethylase, putative; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
 
  
  0.793
EAQ07225.1
Hypothetical protein; COG1522 Transcriptional regulators.
 
 
   0.615
EAQ06035.1
COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
  0.597
EAQ07114.1
Sarcosine oxidase, alpha subunit family; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
  
 0.532
EAQ05301.1
Sarcosine oxidase, alpha subunit family; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
  
 0.532
EAQ08235.1
Sarcosine oxidase, alpha subunit; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
  
 0.532
EAQ05300.1
COG4583 Sarcosine oxidase gamma subunit.
  
  
  0.531
EAQ05740.1
COG0687 Spermidine/putrescine-binding periplasmic protein.
  
    0.496
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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