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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07234.1Hypothetical protein. (253 aa)    
Predicted Functional Partners:
EAQ07233.1
Membrane protein; COG0730 Predicted permeases.
       0.845
dusA
tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
       0.712
EAQ06601.1
Hypothetical protein; COG0699 Predicted GTPases (dynamin-related).
  
     0.510
EAQ07231.1
Hypothetical protein.
       0.472
EAQ07955.1
Hypothetical protein.
  
     0.437
EAQ08218.1
Hypothetical protein; COG0582 Integrase.
  
     0.425
EAQ08253.1
Hypothetical protein; COG0582 Integrase.
  
     0.425
EAQ07230.1
Glutathione-regulated potassium-efflux system protein KefC, putative; COG4651 Kef-type K+ transport system, predicted NAD-binding component.
       0.424
EAQ07115.1
COG4583 Sarcosine oxidase gamma subunit.
  
     0.411
EAQ07569.1
Hypothetical protein; COG0609 ABC-type Fe3+-siderophore transport system, permease component.
  
     0.405
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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