STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07269.1Coenzyme B12-binding; COG5012 Predicted cobalamin binding protein. (278 aa)    
Predicted Functional Partners:
EAQ07558.1
Transcriptional regulator, PpsR; COG2202 FOG: PAS/PAC domain.
 
   
 0.873
EAQ08034.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
   
  0.861
EAQ06946.1
Probable 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.828
EAQ07626.1
Protein pufQ.
  
  
 0.783
EAQ07627.1
LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
   
 0.766
EAQ07567.1
Reaction center H protein.
 
    0.754
EAQ07569.1
Hypothetical protein; COG0609 ABC-type Fe3+-siderophore transport system, permease component.
 
     0.750
EAQ07628.1
LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
   
 0.743
EAQ07572.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
 
  
 0.736
EAQ07568.1
Hypothetical protein.
 
     0.731
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.