Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EAQ05398.1 | EAQ06740.1 | SKA53_00440 | SKA53_14371 | Putative outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Cell division permease protein FtsX, putative. | 0.405 |
| EAQ05398.1 | EAQ07284.1 | SKA53_00440 | SKA53_02771 | Putative outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | 0.938 |
| EAQ06082.1 | EAQ07284.1 | SKA53_08251 | SKA53_02771 | Probable penicillin-binding protein; COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | 0.916 |
| EAQ06082.1 | EAQ07285.1 | SKA53_08251 | SKA53_02776 | Probable penicillin-binding protein; COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein. | 0.672 |
| EAQ06499.1 | EAQ07284.1 | SKA53_05408 | SKA53_02771 | Hypothetical protein. | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | 0.619 |
| EAQ06740.1 | EAQ05398.1 | SKA53_14371 | SKA53_00440 | Cell division permease protein FtsX, putative. | Putative outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.405 |
| EAQ06740.1 | EAQ06810.1 | SKA53_14371 | SKA53_14721 | Cell division permease protein FtsX, putative. | Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid). | 0.515 |
| EAQ06740.1 | EAQ07284.1 | SKA53_14371 | SKA53_02771 | Cell division permease protein FtsX, putative. | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | 0.593 |
| EAQ06810.1 | EAQ06740.1 | SKA53_14721 | SKA53_14371 | Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid). | Cell division permease protein FtsX, putative. | 0.515 |
| EAQ06810.1 | EAQ07284.1 | SKA53_14721 | SKA53_02771 | Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid). | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | 0.842 |
| EAQ06934.1 | EAQ07284.1 | SKA53_15341 | SKA53_02771 | Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid). | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | 0.842 |
| EAQ07283.1 | EAQ07284.1 | SKA53_02766 | SKA53_02771 | Aminotransferase, classes I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase. | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | 0.859 |
| EAQ07283.1 | EAQ07285.1 | SKA53_02766 | SKA53_02776 | Aminotransferase, classes I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase. | Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein. | 0.677 |
| EAQ07283.1 | ispG | SKA53_02766 | SKA53_02761 | Aminotransferase, classes I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase. | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | 0.646 |
| EAQ07283.1 | prfB | SKA53_02766 | SKA53_02781 | Aminotransferase, classes I and II; COG0436 Aspartate/tyrosine/aromatic aminotransferase. | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.561 |
| EAQ07284.1 | EAQ05398.1 | SKA53_02771 | SKA53_00440 | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | Putative outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.938 |
| EAQ07284.1 | EAQ06082.1 | SKA53_02771 | SKA53_08251 | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | Probable penicillin-binding protein; COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. | 0.916 |
| EAQ07284.1 | EAQ06499.1 | SKA53_02771 | SKA53_05408 | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | Hypothetical protein. | 0.619 |
| EAQ07284.1 | EAQ06740.1 | SKA53_02771 | SKA53_14371 | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | Cell division permease protein FtsX, putative. | 0.593 |
| EAQ07284.1 | EAQ06810.1 | SKA53_02771 | SKA53_14721 | N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase. | Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid). | 0.842 |
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