STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07287.1Hypothetical protein. (267 aa)    
Predicted Functional Partners:
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.741
EAQ06178.1
Cytochrome c oxidase, cbb3-type, subunit IV.
 
     0.550
EAQ06163.1
Hypothetical protein.
 
     0.541
EAQ07285.1
Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein.
       0.527
EAQ07679.1
Hypothetical protein.
  
    0.505
EAQ06177.1
Cbb3-type cytochrome c oxidase CcoP subunit; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
     0.473
EAQ06180.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.
 
     0.421
EAQ06179.1
COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.
 
     0.418
EAQ06161.1
fixH protein, putative.
 
     0.409
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.