STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07288.1COG1664 Integral membrane protein CcmA involved in cell shape determination. (166 aa)    
Predicted Functional Partners:
EAQ07289.1
Peptidase, M23/M37 family; COG0739 Membrane proteins related to metalloendopeptidases.
 
   
 0.932
EAQ07290.1
AhpC/TSA family protein; COG1225 Peroxiredoxin.
     
 0.648
EAQ07853.1
Rod shape-determining protein, MreC; COG1792 Cell shape-determining protein.
 
     0.555
EAQ06922.1
Hypothetical protein.
  
     0.552
EAQ05792.1
Hypothetical protein; COG3218 ABC-type uncharacterized transport system, auxiliary component.
   
    0.528
EAQ07291.1
Hypothetical protein.
       0.525
EAQ07973.1
COG3159 Uncharacterized protein conserved in bacteria.
  
     0.505
EAQ07656.1
Lipoprotein, putative.
  
     0.489
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
   
    0.468
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.460
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.