STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07289.1Peptidase, M23/M37 family; COG0739 Membrane proteins related to metalloendopeptidases. (430 aa)    
Predicted Functional Partners:
EAQ07288.1
COG1664 Integral membrane protein CcmA involved in cell shape determination.
 
   
 0.933
EAQ07290.1
AhpC/TSA family protein; COG1225 Peroxiredoxin.
  
  
 0.656
EAQ07285.1
Penicillin-binding protein 1A; COG5009 Membrane carboxypeptidase/penicillin-binding protein.
  
   
 0.641
EAQ06654.1
Glycosyltransferase, family 51; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
  
     0.625
EAQ05890.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
   
 0.611
EAQ06082.1
Probable penicillin-binding protein; COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.597
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
 
  
 0.583
EAQ07775.1
COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.570
EAQ07291.1
Hypothetical protein.
 
     0.568
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
     0.538
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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