EAQ07328.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ07328.1

Competence protein; COG0658 Predicted membrane metal-binding protein. (688 aa)

Predicted Functional Partners:

EAQ06118.1

0.813

EAQ07502.1

0.809

gltX-2

0.707

EAQ07326.1

0.610

EAQ07484.1

0.579

recA

0.576

EAQ06817.1

0.554

EAQ05311.1

0.539

EAQ06268.1

0.536

EAQ05835.1

0.467

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05311.1	EAQ06118.1	SKA53_00005	SKA53_08431	Hypothetical protein.	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	0.578
EAQ05311.1	EAQ06268.1	SKA53_00005	SKA53_04253	Hypothetical protein.	Hypothetical protein.	0.627
EAQ05311.1	EAQ07328.1	SKA53_00005	SKA53_02991	Hypothetical protein.	Competence protein; COG0658 Predicted membrane metal-binding protein.	0.539
EAQ05311.1	EAQ07502.1	SKA53_00005	SKA53_11733	Hypothetical protein.	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	0.539
EAQ05835.1	EAQ06118.1	SKA53_07012	SKA53_08431	Glycosyltransferase, family 2; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	0.551
EAQ05835.1	EAQ07328.1	SKA53_07012	SKA53_02991	Glycosyltransferase, family 2; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.	Competence protein; COG0658 Predicted membrane metal-binding protein.	0.467
EAQ05835.1	EAQ07484.1	SKA53_07012	SKA53_11643	Glycosyltransferase, family 2; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.	COG2003 DNA repair proteins; Belongs to the UPF0758 family.	0.649
EAQ05835.1	EAQ07502.1	SKA53_07012	SKA53_11733	Glycosyltransferase, family 2; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	0.464
EAQ06118.1	EAQ05311.1	SKA53_08431	SKA53_00005	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Hypothetical protein.	0.578
EAQ06118.1	EAQ05835.1	SKA53_08431	SKA53_07012	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Glycosyltransferase, family 2; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.	0.551
EAQ06118.1	EAQ06268.1	SKA53_08431	SKA53_04253	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Hypothetical protein.	0.459
EAQ06118.1	EAQ06817.1	SKA53_08431	SKA53_14756	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Competence protein ComM; COG0606 Predicted ATPase with chaperone activity.	0.772
EAQ06118.1	EAQ07328.1	SKA53_08431	SKA53_02991	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Competence protein; COG0658 Predicted membrane metal-binding protein.	0.813
EAQ06118.1	EAQ07484.1	SKA53_08431	SKA53_11643	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	COG2003 DNA repair proteins; Belongs to the UPF0758 family.	0.656
EAQ06118.1	EAQ07502.1	SKA53_08431	SKA53_11733	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	0.884
EAQ06118.1	recA	SKA53_08431	SKA53_03339	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.692
EAQ06268.1	EAQ05311.1	SKA53_04253	SKA53_00005	Hypothetical protein.	Hypothetical protein.	0.627
EAQ06268.1	EAQ06118.1	SKA53_04253	SKA53_08431	Hypothetical protein.	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	0.459
EAQ06268.1	EAQ07328.1	SKA53_04253	SKA53_02991	Hypothetical protein.	Competence protein; COG0658 Predicted membrane metal-binding protein.	0.536
EAQ06268.1	EAQ07502.1	SKA53_04253	SKA53_11733	Hypothetical protein.	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	0.496